PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062828.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28261.3 Da    PI: 10.1569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.6e-202163749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    s  qvtfskRrng++KKA+EL++L++ae+a+++fs+ +k y +
  XP_027062828.1 21 SHLQVTFSKRRNGLFKKASELCTLTEAEIALVVFSPGQKAYSF 63
                    6679**********************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MAKKLTKGRQ KVPIVKMETM SHLQVTFSKR RNGLFKKASE LCTLTEAEIA LVVFSPGQKA  60
YSFGHLSFES VVDKFLGRNP TPSIQGSIDR YVVANYQEDI SEQNNKLTAL EKLLEAEKRR  120
GEVFDQMAKE AQQKYWWRVP IKELNLEELQ KLEKALQGLK KKIENELHKS PIEAINIPQY  180
LIGQSNSGRN IGLSNGMGVP YGNRASDPNG FSLFGAIARD HVGTTSSNAR APVIGDSNMS  240
HGNNSNRFYK FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32M-type_MADS family protein