PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062843.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26653 Da    PI: 9.8934
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.83.7e-20547749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    s  qvtfskRrng++KKA+EL++L++ae+a+++fs+ +k y +
  XP_027062843.1  5 SHLQVTFSKRRNGLFKKASELCTLTEAEIALVVFSPGQKAYSF 47
                    5679**********************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
METMSHLQVT FSKRRNGLFK KASELCTLTE AEIALVVFSP GQKAYSFGHL SFESVVDKYL  60
GRNPTPSIHG SIDRYVVSNY QEDVSEQNNK LTALEKLLEA EKRRGEVFDQ MAKEAQQKYW  120
WRVPIKELNL EELQKLEKAL QGLKKKIENE LHKRQIEATN TPQYLTRRSN SGRNIGLSNG  180
MGVTYGNRAS DPNGFSLFGA IARDNVGTTS SNARAPVIGD SNMSHGNNSN RFYKFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-25M-type_MADS family protein