PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063005.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 722aa    MW: 80843.5 Da    PI: 9.0088
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2066119154
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     r+  +++t++q++e+e++F+++++p++ +r +LA+ lgL+ +qVk+WFqN+R++
  XP_027063005.1  66 RKGYHRHTPQQIHEMEQFFKQCPKPKKPQRVQLARDLGLDPKQVKYWFQNKRMQ 119
                     677899**********************************************97 PP
2START21.16.3e-08262358589
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     +a++ l+++a+ e p+W          +n+  ++  f +++v      +++ea++   +v m++a+l ++++d+  +W   +a    +a ++evi
  XP_027063005.1 262 SATEKLIRMAEIEYPLWIPIIddksYLLNQGAYYDMF-PGGVwpklagFNVEASKGNDIVKMNHANLAKIFMDTD-KWLAVIAnivsRALVVEVI 354
                     688999***********99997665568999999999.76778********************************.*****999999******** PP

                     CTTE CS
           START  86 ssgg 89 
                     ++g+
  XP_027063005.1 355 TEGS 358
                     *994 PP
3START22.71.9e-08370411164205
                     EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     v+w+ehv +++ ++++l +++v+sg a+ga +w +tl rqce
  XP_027063005.1 370 VIWIEHVQVQAESVQYLGKPFVESGFAFGAPRWISTLTRQCE 411
                     89***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MGPLQELKYK RRKKLSRVNK VKKGKANPGN SNIPPADVMS YASDHGIPDD EDAHKSGEDN  60
QDGHNRKGYH RHTPQQIHEM EQFFKQCPKP KKPQRVQLAR DLGLDPKQVK YWFQNKRMQN  120
EAHTKRARNA HLKLENEKLG DENIKFKAAL TNACCLTCAK SQATSNDSLD RHQLRVENIW  180
LKEKVARLTD LMAKYAGKKY ANNNVGSSSV GPSSSANLEA MIASREWQQN FTKETVVGEE  240
LIRSLSGQTI IDKTTATMLV NSATEKLIRM AEIEYPLWIP IIDDKSYLLN QGAYYDMFPG  300
GVWPKLAGFN VEASKGNDIV KMNHANLAKI FMDTDKWLAV IANIVSRALV VEVITEGSEF  360
GSCNGTLLMV IWIEHVQVQA ESVQYLGKPF VESGFAFGAP RWISTLTRQC EHLATAMQMN  420
FSLYNDSGQF KQYVGAQSFL QLCDWSSQSG WRFGFKLVCW KPGVMGELTL NTDGCSKGNP  480
GACGGGGVLW DPSRRPLVGF SAFFGVTSSL HAETLALTLA LLTGLWICAQ KGEVQQIWKL  540
AGDPARLSHC FRETNKVADI LANVGVAHPH HAVKLYEHWS DWPRLTRREI GLDSIGMRSF  600
RRFRTPSAGL WISEKSAFDY LRDTSTRTQW DILFDGGNIQ EMMQITSDNE SGSCVYLLQV  660
SYASHVPLFP YFSGSVAFAF FPLTSLSFPL AMLLCRLGRR SVVSLAGFNW KGLLCSLCSS  720
MM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.16e-53HD-ZIP family protein