PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063030.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 160aa MW: 18062.7 Da PI: 8.0825

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.6e-10	8	50	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eEd +l +v ++G gt ++ ++ g+ R++k+c++rw +yl XP_027063030.1 8 KEEDNKLRAYVLRYGIGTXAALPKFAGLSRCGKSCRLRWMNYL 50 69***************************************97 PP
2	Myb_DNA-binding	54.5	2.8e-17	56	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE++l++ +++q+G++ W++Ia++++ Rt++++k++w+++l XP_027063030.1 56 RGKYTIEEEDLIIXLHEQYGNR-WSAIAAKLP-ARTDNDIKNHWHTHL 101 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MGKGHGVKEE DNKLRAYVLR YGIGTXAALP KFAGLSRCGK SCRLRWMNYL KPGVRRGKYT 60 IEEEDLIIXL HEQYGNRWSA IAAKLPARTD NDIKNHWHTH LKKRYKESPI CEGSQHIDDA 120 DQNEQSSAMF TSGSSTDQKT EVDPTTSASD SLDAYTDISF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-41	MYB family protein