PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063079.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 216aa    MW: 24767.2 Da    PI: 6.7335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.22e-051362354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                    r + + E+ RR++ ++ ++ L +llP++    sk  l   +   ++++YIks+
  XP_027063079.1 13 REKRIKEKDRRHHFKNLYSLLYSLLPSD---ISKEvLPVPDKIGEVINYIKSM 62
                    558899*********************9...7777799999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MERFHPSTSN LKREKRIKEK DRRHHFKNLY SLLYSLLPSD ISKEVLPVPD KIGEVINYIK  60
SMERKLENYK QMKEKLLGRK RRYSSTKSSE LTNVKVHDMG PDTDMILMSG LKEPASFYGI  120
IHLLQEEGFE VVNANFSNDG NSMLQVVHEK GGISTSSTGT IEIAKRERLK ELIYGYSHGE  180
VESTVDSWDF EVEPDLLASG FLGPLPEGEF SFLQQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-06bHLH family protein