PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063080.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 223aa MW: 25013.2 Da PI: 6.683

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	4.8e-07	12	44	2	33
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C... CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.aska 33 +++ ++ E++RRd++++ +++L +llP+ +sk+ XP_027063080.1 12 KTKRKITEKNRRDQMKNLYNTLYRLLPSnNSKG 44 567899**********************55422 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
METFHASASN TKTKRKITEK NRRDQMKNLY NTLYRLLPSN NSKGFCPVPD KIEDAIYHIK 60 SMEKKLGDYQ EIKKKLLHGK RPRSSASSES NNSSTLTDVE VQDIGPDANM ILISGLEEQA 120 SFYGIIRRLH AEGFEVVTAN FSNTGTSTLQ VVHEKVSSQV GASTSGSETT AVSKRLKELI 180 YGYPQGEVES KLDLLDFEIV PDLLTPDFFG PFATENFCFL QQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	25	EKNRRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-14	bHLH family protein