PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063114.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 498aa    MW: 57892.6 Da    PI: 8.5178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-1323981298
                    HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + + + +p +f+ ++ +gk ++     +  +  ++W+vk+  + +     l++GW+ F+ +n+L +gDfvvF++++++ f   v vf+
  XP_027063114.1 23 E-DGVKIPDSFL-KYlDGKIPQ--NQAVLRRGDEEWRVKI--SDQC----LREGWRAFAVENELHVGDFVVFEHEENMVF--EVLVFD 98
                    4.4599******.555666444..456667899*******..5554....9**********************9998999..777776 PP
2B341.23e-13159245597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++++l  +rl +p +f++++g+ k +   ++l+d++   W+vkl  +  ++  v++ G k+F ka+++kegD ++++l++ +++++v+ ++
  XP_027063114.1 159 TVKPSTLLYHRLHIPMDFVRANGLRK-C--NMMLRDQREILWTVKL--NLEPRCAVIKCGCKSFLKAQEMKEGDEFMLELIR-NGETPVFNFY 245
                     45667777789***********9995.5..5***************..8888889*************************99.5666777765 PP
3B354.71.9e-17275358692
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     + ++  k+++l++p +fa++++++  +s +l+l+d++ r+W v+l  + +++r y++  G  eF  angLkegD++ F+l+++ ++++
  XP_027063114.1 275 IEPHCIKHRILYFPMEFARSNNLSD-RSCDLILRDPKKRVWHVEL--KARGRRvYIFCHGLDEFFTANGLKEGDTCKFELVQN-GKTP 358
                     5788999**************8885.667****************..555555599************************985.3334 PP
4B355.41.1e-17408492593
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ++ +++lk+  l+lp kfa+++g+ + ++ +++++de+ r W+v++  + + +++ +++GW  F+kangLk+gD + F+ ++ +++++v
  XP_027063114.1 408 TIMPYNLKKYVLRLPMKFARQNGLTEMKG-DMIIKDEKQRLWKVNF--EHRANGVEISRGWGYFCKANGLKVGDRFKFEIIK-KGKRPV 492
                     45689999999***********9998887.9***************..88888899***********************987.555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MAMRNKIPPE KPHFFKPILP GFEDGVKIPD SFLKYLDGKI PQNQAVLRRG DEEWRVKISD  60
QCLREGWRAF AVENELHVGD FVVFEHEENM VFEVLVFDPS HCERQFPSID NDGKGGFEKS  120
KAAEAEEIPR SKKVKLEQSD DQEESDSTDQ ICCPYFISTV KPSTLLYHRL HIPMDFVRAN  180
GLRKCNMMLR DQREILWTVK LNLEPRCAVI KCGCKSFLKA QEMKEGDEFM LELIRNGETP  240
VFNFYAKDGL SARKSGHKLS SYDKEPGNPQ FISTIEPHCI KHRILYFPME FARSNNLSDR  300
SCDLILRDPK KRVWHVELKA RGRRVYIFCH GLDEFFTANG LKEGDTCKFE LVQNGKTPIL  360
NFLTDLTKDD QPQPQPPSFM KTNSKNKAKR LEASSEPEND DHPYFVSTIM PYNLKKYVLR  420
LPMKFARQNG LTEMKGDMII KDEKQRLWKV NFEHRANGVE ISRGWGYFCK ANGLKVGDRF  480
KFEIIKKGKR PVMNFHCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.19e-60B3 family protein