PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063140.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 438aa MW: 48280 Da PI: 8.95

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.8e-07	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_027063140.1 266 HYCQVCGKGFKRDANLRMHMRAH 288 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MHNSPRMIIQ GSSNSCFRSG PQGISIYGVS DQDVVSSSSI QAATSAPDTH SSSFLYNLSI 60 LKDKVHQVQS LASTFISSDH NQPPESTPIA VASMGTLIQE IIITASSMMF ACQQVSLGAG 120 GPSGNNNRTS SNELYHHHHS QSHGHGHGHG HHHQRVKVPE LPVAQQNCGG NRVTHFGEDR 180 GQGFYANDAL DNWYGDSYNT NNCSTNYTNT RTSSVTVSNH NNEVGVGRRE LLSQKGEASG 240 ELEKLSPKSY DIVELDAADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKSTAALSN 300 PLKNNLGANG KDQEGLPKLP RKYSCPHEGC RWNKKHAKFQ PLKSMICVKN HYKRSHCPKM 360 YVCKRCSRKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF VGHTPAISSL 420 AKMGKADQNA AQMQLDDR

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MHNSPRMIIQ GSSNSCFRSG PQGISIYGVS DQDVVSSSSI QAATSAPDTH SSSFLYNLSI  60
LKDKVHQVQS LASTFISSDH NQPPESTPIA VASMGTLIQE IIITASSMMF ACQQVSLGAG  120
GPSGNNNRTS SNELYHHHHS QSHGHGHGHG HHHQRVKVPE LPVAQQNCGG NRVTHFGEDR  180
GQGFYANDAL DNWYGDSYNT NNCSTNYTNT RTSSVTVSNH NNEVGVGRRE LLSQKGEASG  240
ELEKLSPKSY DIVELDAADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKSTAALSN  300
PLKNNLGANG KDQEGLPKLP RKYSCPHEGC RWNKKHAKFQ PLKSMICVKN HYKRSHCPKM  360
YVCKRCSRKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF VGHTPAISSL  420
AKMGKADQNA AQMQLDDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-101	C2H2 family protein