PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063464.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 232aa MW: 25804.3 Da PI: 6.3247

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	8.3e-41	112	186	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 C++e+C+adl++ k+yh+rhkvCe h+ka+vv+v+gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk+ XP_027063464.1 112 CRAENCKADLTDSKSYHKRHKVCEYHAKAEVVVVEGLKQRFCQQCSRFHDLSEFDEAKRSCRRRLAGHNERRRKH 186 9************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MEPHMHHLRQ SSSAVHSPFA PTKKVTEEAE TDTEEEEEEE EEEVDEEEEE EEDGNGGFGA 60 EIEVEPGLKK KRMNFDEGPR KRGSRTAAAA AEGAGGGGGG GGGVAVAPPP GCRAENCKAD 120 LTDSKSYHKR HKVCEYHAKA EVVVVEGLKQ RFCQQCSRFH DLSEFDEAKR SCRRRLAGHN 180 ERRRKHFTES RGEGSGRRGS NPGTKKDQCR QVDERGRTPI VLPENHQKLH IH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-36	SBP family protein