PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063465.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family SBP
Protein Properties Length: 180aa    MW: 19568.6 Da    PI: 4.6957
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP66.94.2e-21112158248
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     C++e+C+adl++ k+yh+rhkvCe h+ka+vv+v+gl+qrfCqqCs 
  XP_027063465.1 112 CRAENCKADLTDSKSYHKRHKVCEYHAKAEVVVVEGLKQRFCQQCSS 158
                     9********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MEPHMHHLRQ SSSAVHSPFA PTKKVTEEAE TDTEEEEEEE EEEVDEEEEE EEDGNGGFGA  60
EIEVEPGLKK KRMNFDEGPR KRGSRTAAAA AEGAGGGGGG GGGVAVAPPP GCRAENCKAD  120
LTDSKSYHKR HKVCEYHAKA EVVVVEGLKQ RFCQQCSSSQ ICKVQDLVIL SIQIPRPLRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.23e-18SBP family protein