PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063672.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 238aa    MW: 26993.7 Da    PI: 8.306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.5e-1474121253
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     ++ GVr++k  g+++AeIrdp     + kr++lg+f taeeA +a+ a  +++
  XP_027063672.1  74 RFVGVRRRK-FGKYAAEIRDPI----KkKRIWLGTFKTAEEASEAYLAKQREF 121
                     789***999.9*********72....35******************9987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MTPQSDNLAK KNMTIRKIRV LYSDPAATDS SSDEEQSSHE KKPKRIIHEI LIDQKKMAPS  60
QPKFKWDKKN KEKRFVGVRR RKFGKYAAEI RDPIKKKRIW LGTFKTAEEA SEAYLAKQRE  120
FKALEGFQWE PVDCKQSYLS GSSDEDQLQS SMPTPEALGS PMHTRSESSH DSSSSMSKEN  180
LKVQCLEFDG GCVMGMFVPV PKGPEDYPGS EFFLPILDNQ GFLLGEFSKL DDLSICLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17998RRRKFGKYAAEIRDPIKKKR
28099RRRKFGKYAAEIRDPIKKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.13e-20ERF family protein