PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064243.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 1082aa MW: 118077 Da PI: 6.1822

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	77	124	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+++v+++G g+W tI ++ g+gRt k+c++rw ++l XP_027064243.1 77 KGPWSAEEDERLKKCVEEHGIGNWITIEKYSGLGRTSKSCRLRWTNHL 124 79*******************************************996 PP
2	Myb_DNA-binding	47.2	5.3e-15	130	172	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g++T++E+ l v+++k++G++ W+ I+++++ gRt++++k++w+ XP_027064243.1 130 KGSFTKQEERLVVKLHKKYGNK-WSYISSKLP-GRTDNEIKNFWH 172 799*****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence
MTQNGVEGCL LGTTSCNLVW WSPEVLSGGP FDGGKSKSKD QPCMLEDGDD LDIQGPLENK 60 GGRAAAGEEG DVMVVKKGPW SAEEDERLKK CVEEHGIGNW ITIEKYSGLG RTSKSCRLRW 120 TNHLRPNLKK GSFTKQEERL VVKLHKKYGN KWSYISSKLP GRTDNEIKNF WHGRVRRCRR 180 KFLPIYPEDI EDGGSRGDSL DTDGKNNIND NDHNSSAKNG TNSIPSFPSI TLPEFQPPLS 240 LSVPFEQQPS PVINQNPASF FTPLPRTRLL SPQEKPLPSP HGFLSSHYPS PACYPTHIPQ 300 SPLSTPSQTQ YHSIQRSQST ETPNTTLQNP LLSLPPDCSS IHQSNSPTGP AFTPLKPPPV 360 LSPYVGYLKG SRGSSSLQSS PTAVTQSSAP AQGSSISAKG SSAPSPKIDV SSSVTSSQFS 420 STATGSLINS PKLHLSVQLP TASSVPLQTS SLPSALSSSN LNSPKIHDPM IASPHSPLRL 480 NLTSSIPLDS HLQHNRCASP FLLSSQSWNA SKAEPPSVQT PTSALRPTPE MKDSERSVAV 540 LDAPLQEAQA KADTLHKNSP EELSVDGYLI NNDLQGKILV TESIRDNVFY QSSSERDFSC 600 EKPRTINLLG QSLKQENTTR ETPKTEDLIN KRSCKKVSHD KCLKPGILMG KISRRQGLLS 660 EISKTGVLLV ESEKKQILLQ ELMNNNLTQD VLARRSSKTV DLQLGGLTKT TKLFGERLSI 720 EDPLSQISAR KSSVVQKSEE GVSIFENLTS LRNQNLVEDI LDISPTRSTS NPDTFGFSYS 780 PKDTTTQFIS DDLQWNLSSA QVVAGEVCNE ILRGGAPLAS QLQEHQIETL GPVFSHRPEL 840 VLSNFGYDGG GKSTCGEFYE GDHLDKSSRE KCPDSPKGEF IEDQSQGGQV VSGGFMTEGM 900 LVSQNWHEIL RGSISDLDQY ITANLLRSPT PDGKLNTPQE CGGGIMEEAL SIEGLSSRSL 960 KNGVSLDQSS RDIFVGESSS ANVIGLHEVA LSEFVSPPRQ TTVAHLLTSR DQFSEAGSSQ 1020 CYEGVKLKQE IEEPHPLPEE LSSLLEFSPT TLPDWHDIGC ETSSIMDITF GLEMYHLHPI 1080 MR

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence

MTQNGVEGCL LGTTSCNLVW WSPEVLSGGP FDGGKSKSKD QPCMLEDGDD LDIQGPLENK  60
GGRAAAGEEG DVMVVKKGPW SAEEDERLKK CVEEHGIGNW ITIEKYSGLG RTSKSCRLRW  120
TNHLRPNLKK GSFTKQEERL VVKLHKKYGN KWSYISSKLP GRTDNEIKNF WHGRVRRCRR  180
KFLPIYPEDI EDGGSRGDSL DTDGKNNIND NDHNSSAKNG TNSIPSFPSI TLPEFQPPLS  240
LSVPFEQQPS PVINQNPASF FTPLPRTRLL SPQEKPLPSP HGFLSSHYPS PACYPTHIPQ  300
SPLSTPSQTQ YHSIQRSQST ETPNTTLQNP LLSLPPDCSS IHQSNSPTGP AFTPLKPPPV  360
LSPYVGYLKG SRGSSSLQSS PTAVTQSSAP AQGSSISAKG SSAPSPKIDV SSSVTSSQFS  420
STATGSLINS PKLHLSVQLP TASSVPLQTS SLPSALSSSN LNSPKIHDPM IASPHSPLRL  480
NLTSSIPLDS HLQHNRCASP FLLSSQSWNA SKAEPPSVQT PTSALRPTPE MKDSERSVAV  540
LDAPLQEAQA KADTLHKNSP EELSVDGYLI NNDLQGKILV TESIRDNVFY QSSSERDFSC  600
EKPRTINLLG QSLKQENTTR ETPKTEDLIN KRSCKKVSHD KCLKPGILMG KISRRQGLLS  660
EISKTGVLLV ESEKKQILLQ ELMNNNLTQD VLARRSSKTV DLQLGGLTKT TKLFGERLSI  720
EDPLSQISAR KSSVVQKSEE GVSIFENLTS LRNQNLVEDI LDISPTRSTS NPDTFGFSYS  780
PKDTTTQFIS DDLQWNLSSA QVVAGEVCNE ILRGGAPLAS QLQEHQIETL GPVFSHRPEL  840
VLSNFGYDGG GKSTCGEFYE GDHLDKSSRE KCPDSPKGEF IEDQSQGGQV VSGGFMTEGM  900
LVSQNWHEIL RGSISDLDQY ITANLLRSPT PDGKLNTPQE CGGGIMEEAL SIEGLSSRSL  960
KNGVSLDQSS RDIFVGESSS ANVIGLHEVA LSEFVSPPRQ TTVAHLLTSR DQFSEAGSSQ  1020
CYEGVKLKQE IEEPHPLPEE LSSLLEFSPT TLPDWHDIGC ETSSIMDITF GLEMYHLHPI  1080
MR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26930.1	2e-48	MYB family protein