PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064455.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 256aa MW: 28605 Da PI: 6.8476

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064455.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	121.6	3.3e-38	51	141	7	97
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++Pi+n+ rimk++lP nak+s++ k t+qec se+i f+t+e +++c+ e+rkti+++dll+a a lGf +yv pl+++l++yr+ e++k XP_027064455.1 51 LVPITNILRIMKHILPPNAKVSEEVKTTIQECLSEYIHFITGEVNERCHCEQRKTITAEDLLYAYARLGFSNYVGPLTLFLERYRQNEAAK 141 58***********************************************************************************999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MTKIYGFNVN FSFSDSRTRR CCNPSASGSN VNNNNNSGTP EPYPRLHPGY LVPITNILRI 60 MKHILPPNAK VSEEVKTTIQ ECLSEYIHFI TGEVNERCHC EQRKTITAED LLYAYARLGF 120 SNYVGPLTLF LERYRQNEAA KNIIHGDASV RRTTYFPDAQ GPPPLLTSTP PLLPLMNLTF 180 QVGEDHQGFF INPALMLNDL YFQNVRETDH GDRFDVVGSS SNPDFPALAP FSYGFHTGAS 240 SPPGSYTYGH GPNHGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-38	NF-YB family protein