PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027064608.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 196aa    MW: 22956.4 Da    PI: 9.4459
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027064608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.35.3e-1826113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kf ++YA ++ Fsv+k++ +k  ++g +t r++ C keg +++ + + +  +rtr+ t+++C+ak++  + k + k++v++l+l+HnHel
  XP_027064608.1  26 KFCKKYAFKMDFSVCKDYLNKD-KDGVTTFRRYSCCKEGVKRKYEGD-VMPKRTRTPTKIECRAKMVSVLLKgTIKYRVHDLVLKHNHEL 113
                     5889**************9998.8899****************9999.9999************9987666669***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MDCSILAEDG TPELEMKFNN EKNACKFCKK YAFKMDFSVC KDYLNKDKDG VTTFRRYSCC  60
KEGVKRKYEG DVMPKRTRTP TKIECRAKMV SVLLKGTIKY RVHDLVLKHN HELHIAQYSH  120
MMPLQRKVSE SQRFQAEISE DTGFSLKQSH EFMGKEAGGK GNVGYTQDDF KRYFRTRREM  180
NLKYGEAGSM LNYFQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-16FAR1 family protein