PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065318.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 217aa    MW: 24661.7 Da    PI: 9.8555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-14108205188
                     EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k+lt sdv++  +rl l+k  + +         +++  +++ +t++d+sg+ +++ ++ + k++ yvl++GW +F+ +++L++ D v++ l +
  XP_027065318.1 108 FEKQLTDSDVSECqCRLALSKGEVLDSilpllneqDENIDSGIPVTVYDSSGKDYRMAFQSWSKRKLYVLKSGWTKFCLDHHLQALDWVTIWLFR 202
                     99********99779******9987778**99987444458889***************99****9**********************9977655 PP

                     S.S CS
              B3  87 r.s 88 
                     + +
  XP_027065318.1 203 HmH 205
                     433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MEDEERVKFM KRKRKSLMGS AETSEASKII INGSIVLDKF TDAEVQQAAS TLSVMSKQVL  60
DPKTASELRK RVMKKTKLKL DRGIGGKLPR LPPVARLNGV IGTCSEPFEK QLTDSDVSEC  120
QCRLALSKGE VLDSILPLLN EQDENIDSGI PVTVYDSSGK DYRMAFQSWS KRKLYVLKSG  180
WTKFCLDHHL QALDWVTIWL FRHMHTRSPC FVLSLRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-26B3 family protein