PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065400.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 904aa MW: 99642 Da PI: 5.3616

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.1e-09	845	897	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v++l ++ Wk I + g gRt ++k++w++ XP_027065400.1 845 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 897 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence
MASEIPVPST MAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLRILE 60 SLIVKGNQNK DKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQSFI 120 VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDIPVNG GNSNVLAQRL 180 EDCSINNKVT LPYGNAASPT HTHDNMDDES QENLPDTNLL PAKRKTAAMR SEIVEIQTDG 240 DQTTLDDCCT SHVQATKKFK QKANFTEDTV VQNAIAPTTH GPSTTLSEGV VRYIEKEGCN 300 SKKEVQCGSS TPQNVDDDLE GNFPESNSLP AKRNRTAIAA ENSEGKTLKD QIPLGDGCDI 360 HGEVVKKFKQ DGNSMMDDID EDTVASPVHG LMKFSSEGSV KHIEKEGCNL ETEVQVGGVE 420 SNGSPHGDDD QHYQLKRIAQ SSHAFHQDHL VCDLQVPHDD AKVAELHAEL DGQNNSVDET 480 DGHDQRFELQ TENATSLAMG VMEKNNSPEN PVQNFEGNFQ LSFGGSGSKD DMQHNPDFDM 540 TSDSDDYRDE KMDIALKKDA LLSSQCTYSQ DSFATQAKYC VKCNKEGQLL VCSSDTCQLA 600 VHSSCLPSAA HFDGKGKFYC PFCAYSRAIS EYMQVKRKAS FARKDLASFI GVQTVCQQKK 660 ATMKLGRESR NELRKNEGNN SEDFVNKVSD SHCGVKMGNK HQSEPPLSCS SDHSHSGEKV 720 VSPSDRMPNT LVSGNLERKY MEPQCQLLGV QVEQPVVAHP VHGSDVDRKK AHMADRNEGN 780 AGAEGKKVSE IPESALPQEP VCGPISESSE EDNEKSVRSY SIRLRRPIKN YTYPAIPQLR 840 RKILPWTKAE EEKLKEGVQR LSSPHDRSIP WKQILEFGGD VFQRGRTTID LKDKWRNICK 900 GGPR

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence

MASEIPVPST MAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLRILE  60
SLIVKGNQNK DKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQSFI  120
VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDIPVNG GNSNVLAQRL  180
EDCSINNKVT LPYGNAASPT HTHDNMDDES QENLPDTNLL PAKRKTAAMR SEIVEIQTDG  240
DQTTLDDCCT SHVQATKKFK QKANFTEDTV VQNAIAPTTH GPSTTLSEGV VRYIEKEGCN  300
SKKEVQCGSS TPQNVDDDLE GNFPESNSLP AKRNRTAIAA ENSEGKTLKD QIPLGDGCDI  360
HGEVVKKFKQ DGNSMMDDID EDTVASPVHG LMKFSSEGSV KHIEKEGCNL ETEVQVGGVE  420
SNGSPHGDDD QHYQLKRIAQ SSHAFHQDHL VCDLQVPHDD AKVAELHAEL DGQNNSVDET  480
DGHDQRFELQ TENATSLAMG VMEKNNSPEN PVQNFEGNFQ LSFGGSGSKD DMQHNPDFDM  540
TSDSDDYRDE KMDIALKKDA LLSSQCTYSQ DSFATQAKYC VKCNKEGQLL VCSSDTCQLA  600
VHSSCLPSAA HFDGKGKFYC PFCAYSRAIS EYMQVKRKAS FARKDLASFI GVQTVCQQKK  660
ATMKLGRESR NELRKNEGNN SEDFVNKVSD SHCGVKMGNK HQSEPPLSCS SDHSHSGEKV  720
VSPSDRMPNT LVSGNLERKY MEPQCQLLGV QVEQPVVAHP VHGSDVDRKK AHMADRNEGN  780
AGAEGKKVSE IPESALPQEP VCGPISESSE EDNEKSVRSY SIRLRRPIKN YTYPAIPQLR  840
RKILPWTKAE EEKLKEGVQR LSSPHDRSIP WKQILEFGGD VFQRGRTTID LKDKWRNICK  900
GGPR