PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065401.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 806aa MW: 88836.8 Da PI: 5.6671

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.4e-09	747	799	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v++l ++ Wk I + g gRt ++k++w++ XP_027065401.1 747 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 799 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MSAMDLTAVA PEMLNGDVQS FIVHKRASLP KPALQKLKDA ILEGSHSILS SLKERSGLTV 60 TTQCNDDIPV NGGNSNVLAQ RLEDCSINNK VTLPYGNAAS PTHTHDNMDD ESQENLPDTN 120 LLPAKRKTAA MRSEIVEIQT DGDQTTLDDC CTSHVQATKK FKQKANFTED TVVQNAIAPT 180 THGPSTTLSE GVVRYIEKEG CNSKKEVQCG SSTPQNVDDD LEGNFPESNS LPAKRNRTAI 240 AAENSEGKTL KDQIPLGDGC DIHGEVVKKF KQDGNSMMDD IDEDTVASPV HGLMKFSSEG 300 SVKHIEKEGC NLETEVQVGG VESNGSPHGD DDQHYQLKRI AQSSHAFHQD HLVCDLQVPH 360 DDAKVAELHA ELDGQNNSVD ETDGHDQRFE LQTENATSLA MGVMEKNNSP ENPVQNFEGN 420 FQLSFGGSGS KDDMQHNPDF DMTSDSDDYR DEKMDIALKK DALLSSQCTY SQDSFATQAK 480 YCVKCNKEGQ LLVCSSDTCQ LAVHSSCLPS AAHFDGKGKF YCPFCAYSRA ISEYMQVKRK 540 ASFARKDLAS FIGVQTVCQQ KKATMKLGRE SRNELRKNEG NNSEDFVNKV SDSHCGVKMG 600 NKHQSEPPLS CSSDHSHSGE KVVSPSDRMP NTLVSGNLER KYMEPQCQLL GVQVEQPVVA 660 HPVHGSDVDR KKAHMADRNE GNAGAEGKKV SEIPESALPQ EPVCGPISES SEEDNEKSVR 720 SYSIRLRRPI KNYTYPAIPQ LRRKILPWTK AEEEKLKEGV QRLSSPHDRS IPWKQILEFG 780 GDVFQRGRTT IDLKDKWRNI CKGGPR

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MSAMDLTAVA PEMLNGDVQS FIVHKRASLP KPALQKLKDA ILEGSHSILS SLKERSGLTV  60
TTQCNDDIPV NGGNSNVLAQ RLEDCSINNK VTLPYGNAAS PTHTHDNMDD ESQENLPDTN  120
LLPAKRKTAA MRSEIVEIQT DGDQTTLDDC CTSHVQATKK FKQKANFTED TVVQNAIAPT  180
THGPSTTLSE GVVRYIEKEG CNSKKEVQCG SSTPQNVDDD LEGNFPESNS LPAKRNRTAI  240
AAENSEGKTL KDQIPLGDGC DIHGEVVKKF KQDGNSMMDD IDEDTVASPV HGLMKFSSEG  300
SVKHIEKEGC NLETEVQVGG VESNGSPHGD DDQHYQLKRI AQSSHAFHQD HLVCDLQVPH  360
DDAKVAELHA ELDGQNNSVD ETDGHDQRFE LQTENATSLA MGVMEKNNSP ENPVQNFEGN  420
FQLSFGGSGS KDDMQHNPDF DMTSDSDDYR DEKMDIALKK DALLSSQCTY SQDSFATQAK  480
YCVKCNKEGQ LLVCSSDTCQ LAVHSSCLPS AAHFDGKGKF YCPFCAYSRA ISEYMQVKRK  540
ASFARKDLAS FIGVQTVCQQ KKATMKLGRE SRNELRKNEG NNSEDFVNKV SDSHCGVKMG  600
NKHQSEPPLS CSSDHSHSGE KVVSPSDRMP NTLVSGNLER KYMEPQCQLL GVQVEQPVVA  660
HPVHGSDVDR KKAHMADRNE GNAGAEGKKV SEIPESALPQ EPVCGPISES SEEDNEKSVR  720
SYSIRLRRPI KNYTYPAIPQ LRRKILPWTK AEEEKLKEGV QRLSSPHDRS IPWKQILEFG  780
GDVFQRGRTT IDLKDKWRNI CKGGPR