PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065407.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 252aa    MW: 28670.9 Da    PI: 6.0394
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.99.1e-4541341127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     lppGfrF Pt+eel+++yL+ k+eg++ ++++vi+ vdiy+++P dLp+    +++++ ++w+fF++ + ++a+g r+nr t++gyWkatg+   
  XP_027065407.1   4 LPPGFRFYPTEEELISFYLHSKLEGRRQDIDTVIPVVDIYDHKPCDLPQfageCCRGDPEQWFFFIPMQDREARGGRPNRLTTEGYWKATGSPGC 98 
                     79****************************999***************656766666888*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     v+s++++ +g+k+t+vfykgrap+gekt+W m+ey+
  XP_027065407.1  99 VYSSQNRIIGVKRTMVFYKGRAPNGEKTQWKMNEYK 134
                     ***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MENLPPGFRF YPTEEELISF YLHSKLEGRR QDIDTVIPVV DIYDHKPCDL PQFAGECCRG  60
DPEQWFFFIP MQDREARGGR PNRLTTEGYW KATGSPGCVY SSQNRIIGVK RTMVFYKGRA  120
PNGEKTQWKM NEYKAIDGEA SSAAPPKLRQ EMSLCRLYIG SKSLRAFDRR PPPPPGETSS  180
HHRQPHHQED QPATITSHQT HPPSLAAEIA SSTSGSGEDN FLASSSQGLE NESHDLAFNP  240
EPMWDWEQLN WF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-83NAC family protein