PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065577.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 235aa    MW: 26627.1 Da    PI: 4.6421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-124892554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + e Er+RR+++ + ++ Lr ++P+ +      K++Ka+i + A++YI++L
  XP_027065577.1 48 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAIDYIQEL 92
                    5689*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDDVDVYKDY WENMILQTEQ LGRNFDESFS FYDSSSPDGA QSSAASKNIE SERKRRQKLT  60
ETLHALRAVV PNISKMDKAS IIKDAIDYIQ ELHNQERVIQ AEISELESKR SIFLDFDEEI  120
SCNSKPKRSR FEQTCDSAES RSSPIEVLEL RVSHMGEKTI VVSLTCSKRT DTMVKICEVF  180
ESLNLKIITA NIIAFSGSVL KTLFLEANEE ETDVVKIKIQ TAIAALNDPD SPMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-71bHLH family protein