PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065578.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 223aa    MW: 25131.5 Da    PI: 4.7564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-123680554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + e Er+RR+++ + ++ Lr ++P+ +      K++Ka+i + A++YI++L
  XP_027065578.1 36 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAIDYIQEL 80
                    5689*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MDDVDVYKDY WENMILQTEQ LGSSPDGAQS SAASKNIESE RKRRQKLTET LHALRAVVPN  60
ISKMDKASII KDAIDYIQEL HNQERVIQAE ISELESKRSI FLDFDEEISC NSKPKRSRFE  120
QTCDSAESRS SPIEVLELRV SHMGEKTIVV SLTCSKRTDT MVKICEVFES LNLKIITANI  180
IAFSGSVLKT LFLEANEEET DVVKIKIQTA IAALNDPDSP MSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-75bHLH family protein