PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065718.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 329aa    MW: 35973.3 Da    PI: 10.1384
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.11.6e-29163217358
       CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     p++VN KQy++Il+RRq Rak+e ++k+  k+rkpylh SRh hA+rRpRg+gGrF
  XP_027065718.1 163 PIFVNVKQYNGILRRRQYRAKAELQNKV-LKNRKPYLHLSRHLHAMRRPRGCGGRF 217
                     9***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MAMHGGLFAK EANTTSAFSA VPWWSTGLGS QPAGFHDDLF GQFKPASSAV DKPSNTGTQL  60
TPSREPERNG GQETGNGKTN KFTIFSGECK DPPNGQKFRL QNASNMQAAA AEYRGHLELG  120
FSQPLICAKY PYGEQCHSVF STYGPQLTGR IMLPLNSTSD EVPIFVNVKQ YNGILRRRQY  180
RAKAELQNKV LKNRKPYLHL SRHLHAMRRP RGCGGRFLNT KNLNGSKSNS DDNTTAKGRF  240
SRPTGSQSSD VLQSDSGNSS SPRKANGCRS YNLGTEVTSV YSRGDLDPFP FNNLSSAIQS  300
LPNMMTSGHW IVPPGKWVVA ADSCCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.18e-48NF-YA family protein