PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065905.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 177aa MW: 19806.6 Da PI: 9.8635

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.2e-19	53	106	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq +Le+ F+ +++p+++ + eLA++lgL rqV +WFqNrRa+ k XP_027065905.1 53 KKSRLSKEQAAVLEANFNDHPNPDTALKNELADRLGLFPRQVDIWFQNRRARTK 106 56789***********************************************98 PP
2	HD-ZIP_I/II	90.3	2.2e-29	53	139	2	88
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk rlskeq+++LE +F+ + + ++ K+ela +Lgl prqv++WFqnrRARtk+k+ +++e+Lk+ +++l een +L++e e+ + XP_027065905.1 53 KKSRLSKEQAAVLEANFNDHPNPDTALKNELADRLGLFPRQVDIWFQNRRARTKSKKNVSECERLKQVCKNLIEENLKLSEEIEKQK 139 9*******************************************************************************9998755 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MEARENSNTQ LSLALGPRKN TKRGPRKNTK RVLSLELSLG AQQVQGSSDE NAKKSRLSKE 60 QAAVLEANFN DHPNPDTALK NELADRLGLF PRQVDIWFQN RRARTKSKKN VSECERLKQV 120 CKNLIEENLK LSEEIEKQKA LATGDQKGAF YAYGLSGYVL VCPVCHQQYL IGSCGAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	7e-27	HD-ZIP family protein