PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066065.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 316aa MW: 33673.6 Da PI: 8.2977

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	116	160	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky XP_027066065.1 116 PWTEEEHRSFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 160 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MGRKCSHCGN IGHNSRTCTA YSSGNISVMA AGLRLFGVQL DVSCNSAPSS SNSNSIAMKK 60 SFSLDCLSSS PTSSPSPSSS LSSSRISIGE NSDKISIGYL SDGLLGRPQE RKKGVPWTEE 120 EHRSFLVGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQASLNKK KRRSSLFDMV 180 GSKNAIVRHQ VFDLSFELNN DTTSANCLSS KASSDLDTAA HLLDLNSFAV DATTNHQDCI 240 EVQEGSSSHH MDIDSMSIWP AASGSSSYQL SNISSITSTT GAPDLELTLA APKTAAQNNP 300 PPPPASILIM GPISVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	173	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	6e-54	MYB_related family protein