PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066283.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 198aa    MW: 21888.3 Da    PI: 10.0656
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-103981148
             AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48
                    s+y+GV+++  +grW+A+         k++  ++ +fg++eeAa a++ 
  XP_027066283.1 39 SKYRGVTRYFETGRWFAY---K---AsKKRGQYIRTFGSEEEAAMAYDI 81
                    89****************...5...356799****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MDDEELIAHV RRSGSGIARA GSKYHGVTRS SSQFASAGSK YRGVTRYFET GRWFAYKASK  60
KRGQYIRTFG SEEEAAMAYD IETIKKKGWN AQTNFSLALY DVAGIRAGTA NPPITEEAAK  120
YLQQATMWSS SGEAQGHSSS GYHSILHQAQ ISFVRYSQTL MHILSAHSNF QTHNVAGSSA  180
QHMFSHSSSS PFKPYVKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.17e-18AP2 family protein