PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066500.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 353aa MW: 39538.4 Da PI: 6.9051

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_027066500.1 14 KGPWSPEEDAKLKAYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.9	2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_027066500.1 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSQMNRLS GSGQDQKDAH GGIEENTLQN LSSSALERLQ LHMQLQSLQN PFSFYNNPAL 180 WPKLNPLQEK MIQSLQNLTE SQNPSMQQVS PSPQSGLGQN IEFLEQSAIS SRLQQELENS 240 INPLNPGNNP IDSTLAPKSN VMQQPGSEYQ PISTFTPAEI ENLLSSKTAG FLSSDNQMAE 300 FDCFKEIDGV RDALMWWSND MDTNSASSNS WDSASLLQQS GGMYQDYAVG YNM

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSQMNRLS GSGQDQKDAH GGIEENTLQN LSSSALERLQ LHMQLQSLQN PFSFYNNPAL  180
WPKLNPLQEK MIQSLQNLTE SQNPSMQQVS PSPQSGLGQN IEFLEQSAIS SRLQQELENS  240
INPLNPGNNP IDSTLAPKSN VMQQPGSEYQ PISTFTPAEI ENLLSSKTAG FLSSDNQMAE  300
FDCFKEIDGV RDALMWWSND MDTNSASSNS WDSASLLQQS GGMYQDYAVG YNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-98	MYB family protein