PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066504.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21371.2 Da    PI: 7.9336
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.4e-131149341
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    i nks+r+ t+ k r  ++ KA+ LS+LCd+ev vi+  
  XP_027066504.1 11 IPNKSQRKATLKKCRDCLFRKAKQLSTLCDVEVGVIVQD 49
                    88**********************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MTRKKRKYVA IPNKSQRKAT LKKCRDCLFR KAKQLSTLCD VEVGVIVQDQ EKKDVFVWPS  60
HHEVEEKLMR FLNVPDIDRT GNFLHMKASL QEHQTNAYIP NPKLIEDLKY DNWLREAMFD  120
KPSNTFPSCA SDIGFHHTNA CSNEGNNMVN HNTAGSSSGG NHMDITPPNV ADPSFGTNDG  180
FPEIIVVSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333RKKRKYVAIPNKSQRKATLKKCRDCLFRKAK
2434RKKRKYVAIPNKSQRKATLKKCRDCLFRKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-11M-type_MADS family protein