PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066527.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 350aa MW: 38449.1 Da PI: 9.2955

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	6e-18	184	238	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027066527.1 184 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 238 788899***********************************************98 PP
2	HD-ZIP_I/II	127.9	4.1e-41	184	274	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_027066527.1 184 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 274 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MELALSLGDT PKPFTFLDKA QKVVNRDLGF CMGLGKGAAD RGGDHQSRNS RESDGERRGS 60 SDPPVQLDLL PFSPVPRSQT SSSQLSFSWL TQHLTVAAEP GSSNGFTRAV DVNRRSLGVD 120 KGGEEGTTAL SSPNSAASSF QMDFSIYRSG SRSNKRSENE AENDIRGGMA SSRASDEDEN 180 GMARKKLRLT KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK 240 QTEVDCEYLK RCCETLTEEN RRLQKELQEL RALKSSQPFY MQLPATTLTM CPSCERVAST 300 STAATANTNV TSPPAAAADI ANTTLSLAKP RQTQMVPFSP LQVQGPQAAL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MELALSLGDT PKPFTFLDKA QKVVNRDLGF CMGLGKGAAD RGGDHQSRNS RESDGERRGS  60
SDPPVQLDLL PFSPVPRSQT SSSQLSFSWL TQHLTVAAEP GSSNGFTRAV DVNRRSLGVD  120
KGGEEGTTAL SSPNSAASSF QMDFSIYRSG SRSNKRSENE AENDIRGGMA SSRASDEDEN  180
GMARKKLRLT KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK  240
QTEVDCEYLK RCCETLTEEN RRLQKELQEL RALKSSQPFY MQLPATTLTM CPSCERVAST  300
STAATANTNV TSPPAAAADI ANTTLSLAKP RQTQMVPFSP LQVQGPQAAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	241	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-70	HD-ZIP family protein