PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066545.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 562aa MW: 62791 Da PI: 7.486

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.5	8.2e-25	231	283	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ WtpeLH++Fv av+qL G+ +A+Pk++lelm+ + Lt+ +v+SHLQkYR XP_027066545.1 231 KARVTWTPELHAKFVAAVQQL-GQ-EAVPKKVLELMNEPHLTRGNVASHLQKYRK 283 68*****************.65.5**************************6 PP
2	Myb_DNA-binding	41.4	3.4e-13	233	282	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 r WT+e++ ++v av+qlG + +k++ + m+ ++t+ ++ s++qky+ XP_027066545.1 233 RVTWTPELHAKFVAAVQQLGQEaVPKKVLELMNePHLTRGNVASHLQKYR 282 679****************9*************************7 PP
3	Response_reg	50	1.7e-17	25	146	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT.......TT....SEEEEEE.ST CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee.......pk....lpiivvt.ah 80 vl +dD+ + +++l+ l+k gy +v++++++ ea+e+l++++ +D++++D++ ++md ++ll+ i e + p+ ++ +++t a+ XP_027066545.1 25 VLAIDDNVVCLKVLAFELQKCGY-QVTATTKAAEAIEILRKNKdsYDIVITDVMRSDMDVFKLLEIIgLEMDipvisdePTsifsIRFVFMTsAN 118 7899*****************.***********888889******************8777796665442277778889999789 PP TTHHHHHHHHHTTESEEEESS--HHHHH CS Response_reg 81 geeedalealkaGakdflsKpfdpeelv 108 ++ e +++ + Ga+d+l+Kp+ e l XP_027066545.1 119 NDLEVIEKGVMHGARDYLVKPVGLEILK 146 99*****************9988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MFNAHLASQP SFQQRDNHFS QGLRVLAIDD NVVCLKVLAF ELQKCGYQVT ATTKAAEAIE 60 ILRKNKDSYD IVITDVMRSD MDVFKLLEII GLEMDIPVIS DEPTSIFSIR FVFMTSANND 120 LEVIEKGVMH GARDYLVKPV GLEILKNIWQ HVIRKTTYNP LPAQRIEANR AIRIPAQQIE 180 ANMASRVPAQ KMEADRAIRR SARVLHKKNH TVEDGQAVQP HDAPPLLEHK KARVTWTPEL 240 HAKFVAAVQQ LGQEAVPKKV LELMNEPHLT RGNVASHLQK YRKAALKQKE DARQQIEYHC 300 DANMRRHLDD ANIRASSSQN QRFHAVSHSN SSAAYGRYNL RSQNNPSLLT LNHQLSDLFL 360 QQNVGLVPSQ SRDMNHIQQQ VLTPTPLVTI CPDVQPEFNS IEYHPIQCRR NKNTIIDSER 420 VSLQIPLSGA IHTSASHHSS FLNTLRGKSI NEIATCPLAP GALINHIGNS NHDPKGQATS 480 LPGHHEARTY NGNGGTDSRG KAGTTGLVLD MQAQVDGLIG DEHINYMQFS DTDVHGHQRN 540 DSLDDELRSL VGQFAEDAAP TI

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MFNAHLASQP SFQQRDNHFS QGLRVLAIDD NVVCLKVLAF ELQKCGYQVT ATTKAAEAIE  60
ILRKNKDSYD IVITDVMRSD MDVFKLLEII GLEMDIPVIS DEPTSIFSIR FVFMTSANND  120
LEVIEKGVMH GARDYLVKPV GLEILKNIWQ HVIRKTTYNP LPAQRIEANR AIRIPAQQIE  180
ANMASRVPAQ KMEADRAIRR SARVLHKKNH TVEDGQAVQP HDAPPLLEHK KARVTWTPEL  240
HAKFVAAVQQ LGQEAVPKKV LELMNEPHLT RGNVASHLQK YRKAALKQKE DARQQIEYHC  300
DANMRRHLDD ANIRASSSQN QRFHAVSHSN SSAAYGRYNL RSQNNPSLLT LNHQLSDLFL  360
QQNVGLVPSQ SRDMNHIQQQ VLTPTPLVTI CPDVQPEFNS IEYHPIQCRR NKNTIIDSER  420
VSLQIPLSGA IHTSASHHSS FLNTLRGKSI NEIATCPLAP GALINHIGNS NHDPKGQATS  480
LPGHHEARTY NGNGGTDSRG KAGTTGLVLD MQAQVDGLIG DEHINYMQFS DTDVHGHQRN  540
DSLDDELRSL VGQFAEDAAP TI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	2e-55	ARR-B family protein