PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067301.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 330aa MW: 36673.9 Da PI: 6.5083

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l ++++++G+g +W + +r+ g++R++k+c++rw++yl XP_027067301.1 14 RGPWSPEEDAILRNYIEKYGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	44.2	4.4e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd +++ + G++ W+ Ia++++ gRt++++k++w++ XP_027067301.1 69 GGFTDEEDSIILTLYSNIGSR-WSVIASHLP-GRTDNDVKNHWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGRAPCCDKT KVKRGPWSPE EDAILRNYIE KYGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTDEEDSIIL TLYSNIGSRW SVIASHLPGR TDNDVKNHWN TKLKKKLSAA 120 GAKRAVNATN PTTVIPIVDS NSNNFTSNPS AFTLATSFNK PQPDCYGNST YPIVGSDAPV 180 QYSSMDHMVP GYSMTEVVPD LLYDSSSTDQ FSLPELFEVQ KNSTLQKNGF TTSSSQEISS 240 LSPSCSLAKS YSSWNDNLFG EEVGFFMELE SRSSNYNLVQ SAQQEEKVRN EVEGSCLPIY 300 SYPTASFFDQ MSDNILPPQG HHQTAFPILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-67	MYB family protein