PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067458.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 291aa    MW: 34081.3 Da    PI: 9.2666
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.95.9e-1726100176
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkw 76 
                     kfYn+YA ++GFsvrk++ +k  ++g +++r++ C+keg +++ + + +  +rt+a t+tgC ak+++ + + + k+
  XP_027067458.1  26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTMSRRYSCYKEGVKRKYEGD-VIPKRTQAPTKTGCGAKMVIVLLRgTMKY 100
                     6*****************9998.8899****************9999.9999***************9877656666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MDCSKLAENR TPELGMEFNS EEDVYKFYNK YAFKMGFSVR KDYLNKDKDG VTMSRRYSCY  60
KEGVKRKYEG DVIPKRTQAP TKTGCGAKMV IVLLRGTMKY RSHELMGKEA CDLKNAGYTR  120
EDLKRYFRTR RERSLKYGEA GMLIDYNFFG DIVTFDTTYK TNKEYRPLGV FVSFNQHRQI  180
VIFGAALMYD ETIDSFKWVF GTLLEAMCGK RPSTILTDQD HAMAAALSVV IPETFHGLCT  240
FHIRRNFMKY LGNHYKENSD LPYMFGACMY EIEEVKQFNR LWEAMVKKHN L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.17e-39FAR1 family protein