PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067500.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15424.8 Da    PI: 10.0857
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.2e-151158148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    k+ie +s r vtfskRr+g++KK  EL    +a+v vi+fs+ g+ y+
  XP_027067500.1 11 KKIEKESSRMVTFSKRRKGLFKKVRELQAKIGANVVVIVFSPAGNPYT 58
                    68*****************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MGSGKKKIEI KKIEKESSRM VTFSKRRKGL FKKVRELQAK IGANVVVIVF SPAGNPYTIG  60
DVSLFDNALN KGTCPASGGA TFNGFDFEKG GKDANAFCAS TSNGLREWLN GIDVDGCSEI  120
EKLLHMKEQL LVAGERIQGL IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.23e-12MIKC_MADS family protein