PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067532.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 431aa MW: 49513.1 Da PI: 6.5513

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76	7.7e-24	79	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAk+vGF +rksk +k + g+i++r f+Cs egkr +k++ ++ + +r+etr gC ak+k++ +k++k++v+++ eHnH l+ XP_027067532.1 79 QFYLAYAKKVGFGTRKSKLHKD-KIGKIIDRIFCCSAEGKRGADKRD-VNVKIHRPETRFGCLAKMKISCSKSEKYRVIEFIPEHNHYLC 166 6****************999.5566*************999.99999*********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MEGDDSLESK FPPCRKLEFI DDTQHHHSSQ TINEDTDIEL IGASSSNKET DINSIHPSIP 60 KEEIPQVGME FDSEEAAGQF YLAYAKKVGF GTRKSKLHKD KIGKIIDRIF CCSAEGKRGA 120 DKRDVNVKIH RPETRFGCLA KMKISCSKSE KYRVIEFIPE HNHYLCSPHK THLFRAHRRI 180 HETHVIEIDM ANSVGIAPKV SHEFMVKQAG GRDNLGFIPE DYRNYLRSKR TRDMKIGDTG 240 GVLEYLQGMQ LENPNFFYSI QVDKDDLMTN IFWANARMKV DYADFGDVVC FDTTYKKNCD 300 GRPLALFIGV NHHKKTIIFG GALLYDETAP TFEWLFDVFA STMSGKKPKT ILTDQDAAMA 360 KALASRWPET QHRLCIWHLY QNAAIHLSGV FEKFTDFAGD FGKCIYDFEE EDIFVTEWDK 420 MLQRYNLQDN D

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MEGDDSLESK FPPCRKLEFI DDTQHHHSSQ TINEDTDIEL IGASSSNKET DINSIHPSIP  60
KEEIPQVGME FDSEEAAGQF YLAYAKKVGF GTRKSKLHKD KIGKIIDRIF CCSAEGKRGA  120
DKRDVNVKIH RPETRFGCLA KMKISCSKSE KYRVIEFIPE HNHYLCSPHK THLFRAHRRI  180
HETHVIEIDM ANSVGIAPKV SHEFMVKQAG GRDNLGFIPE DYRNYLRSKR TRDMKIGDTG  240
GVLEYLQGMQ LENPNFFYSI QVDKDDLMTN IFWANARMKV DYADFGDVVC FDTTYKKNCD  300
GRPLALFIGV NHHKKTIIFG GALLYDETAP TFEWLFDVFA STMSGKKPKT ILTDQDAAMA  360
KALASRWPET QHRLCIWHLY QNAAIHLSGV FEKFTDFAGD FGKCIYDFEE EDIFVTEWDK  420
MLQRYNLQDN D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-85	FAR1 family protein