PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067694.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 284aa    MW: 32039.7 Da    PI: 7.2375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09104146855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++rRR+ +N+ f  L  llP       +K +K++i ++ v+YIk+L+
  XP_027067694.1 104 ADKRRREILNKQFLALAALLPGM-----TKTDKISIMRESVKYIKQLR 146
                     78********************8.....8*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MDPSINFPFE NLEALSGEDG ELDSVLGENN RFPAFLDQLW ASFFSPDNLS SSGPEHDCPV  60
ADSHPLSSVP DQLLNDTSPC ASSHKNRISS LAARNLQYKK NLLADKRRRE ILNKQFLALA  120
ALLPGMTKTD KISIMRESVK YIKQLRKEHN KLKEHNPNQA VIVKKSGVFE EQNGCSIHER  180
SSVCNQEQLP EIEVRMYEKN ILLTIRCQKD KVVLANIHVE IAKLNLTVIS CDIMSFAGLT  240
YEIIILAEMD TDFSLREKCL VKRLRSALAI HEKLNSSIRS GHNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-29bHLH family protein