PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067800.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 852aa MW: 97924.5 Da PI: 8.4788

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.5	4.6e-23	69	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAkevGF +++s+ +k ng+ ++r f+Cs egkr ++k++ + r +r+etr +C ak+kv+ +++gk+++ +l eHnH l+ XP_027067800.1 69 NFYLAYAKEVGFGIKRSSFHKD-SNGKLMDRVFCCSAEGKRGKDKRD-LNVRAPRPETRFNCSAKMKVNSRQTGKFRICQLIIEHNHYLS 156 6**************98887.8888*************999.999**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence
MDAKASMETE VSFCRRLDFD KIDQITNDEV STPPVLNVIK DINKIHTLIP FELIPKMGME 60 FESEEDAYNF YLAYAKEVGF GIKRSSFHKD SNGKLMDRVF CCSAEGKRGK DKRDLNVRAP 120 RPETRFNCSA KMKVNSRQTG KFRICQLIIE HNHYLSSPNK SHLHRSHRKI NSIHAAEIDM 180 AYRVGIAPKV SHELMALQVG GRENLGFIPE DYKNYLCSKR TIQMEVGDTG GVLEYLQKMQ 240 LEDPNFFYAI QVDQDALITN IFWADGLMRV DYASFGDVVC FDTTYRKNNE GRPFALFVGV 300 NNHKQTAIFG AALLYDETTS TFEWLFDTFA RAMSGKKPNT ILTDQDAAMA KGLISTWPET 360 RHRLCIWHIF QNAAIHLSHV FEKFKQFAND FSRCVYDFDE EEDFIYEWNS MLKKYGLEDN 420 DWLKRIFEIR EKWALVYGRE TFCADMTTTQ RSESMNSVIK RYVTYKNKFH EFFNHFERLV 480 DDRRYKELQA NFRAYMSTPV LPFDVDVLKQ AASVYTPEVF KWFEVEWGKS HDCGIITYSE 540 VGTVTEYKIT PKGRKNYHMV RFDAIGDQIS CSCRKFEFSG ILCSHSLKVL NVRNIMKIPS 600 QYIIKRWTSK AKAGYITDND SCNINNDLDP KVLFTKRYRD LCRLYTQLVT KAAQAEETYR 660 IAKEGLLKML DLVDARLHQE GLSNEMSNAT KGSSPTNNTT NASGINIKGI KKKTKTISGK 720 RLRSSLEKAT KRRRSTKKSL QNSVTMKLSA SSHDEPVGDI INIVSTGCSI QHHGLQEANT 780 NEVSMIESLQ YQQNYGQLCT FSSMNMTGLL KAQELHGFGG AKINQFELND NSYTMGQKVG 840 ADCNEEVCRS HR

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence

MDAKASMETE VSFCRRLDFD KIDQITNDEV STPPVLNVIK DINKIHTLIP FELIPKMGME  60
FESEEDAYNF YLAYAKEVGF GIKRSSFHKD SNGKLMDRVF CCSAEGKRGK DKRDLNVRAP  120
RPETRFNCSA KMKVNSRQTG KFRICQLIIE HNHYLSSPNK SHLHRSHRKI NSIHAAEIDM  180
AYRVGIAPKV SHELMALQVG GRENLGFIPE DYKNYLCSKR TIQMEVGDTG GVLEYLQKMQ  240
LEDPNFFYAI QVDQDALITN IFWADGLMRV DYASFGDVVC FDTTYRKNNE GRPFALFVGV  300
NNHKQTAIFG AALLYDETTS TFEWLFDTFA RAMSGKKPNT ILTDQDAAMA KGLISTWPET  360
RHRLCIWHIF QNAAIHLSHV FEKFKQFAND FSRCVYDFDE EEDFIYEWNS MLKKYGLEDN  420
DWLKRIFEIR EKWALVYGRE TFCADMTTTQ RSESMNSVIK RYVTYKNKFH EFFNHFERLV  480
DDRRYKELQA NFRAYMSTPV LPFDVDVLKQ AASVYTPEVF KWFEVEWGKS HDCGIITYSE  540
VGTVTEYKIT PKGRKNYHMV RFDAIGDQIS CSCRKFEFSG ILCSHSLKVL NVRNIMKIPS  600
QYIIKRWTSK AKAGYITDND SCNINNDLDP KVLFTKRYRD LCRLYTQLVT KAAQAEETYR  660
IAKEGLLKML DLVDARLHQE GLSNEMSNAT KGSSPTNNTT NASGINIKGI KKKTKTISGK  720
RLRSSLEKAT KRRRSTKKSL QNSVTMKLSA SSHDEPVGDI INIVSTGCSI QHHGLQEANT  780
NEVSMIESLQ YQQNYGQLCT FSSMNMTGLL KAQELHGFGG AKINQFELND NSYTMGQKVG  840
ADCNEEVCRS HR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	733	739	RRSTKKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-132	FAR1 family protein