PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067814.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 809aa MW: 93591.5 Da PI: 8.4116

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.3e-20	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YA ++GFsv+k++ +k ++ +t+r++ C keg +++ k + + +rtra t+tgC ak+++ + + + k++v++l+le nHel XP_027067814.1 26 KFYKKYAFKMGFSVSKNYLNKD-KDSVTTSRRYSCCKEGVKRKYKGD-VMPKRTRAPTKTGCGAKMVIILFRgTMKYCVHDLVLERNHEL 113 6***************9998.6777************9999.999**************9999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MDCSKLTEDG TPELGMEFNS EEDAYKFYKK YAFKMGFSVS KNYLNKDKDS VTTSRRYSCC 60 KEGVKRKYKG DVMPKRTRAP TKTGCGAKMV IILFRGTMKY CVHDLVLERN HELHITQCAH 120 MMPSQRKVSV AQGFQGEISE DAGFSMKQSH ELMGKEAGGM GNVDYTRDDL KRYLRTRRER 180 SLKYGEAGSM INYFQEQTLE NPSFFHAVQL DCEEEITNIF WTDTGMLIDY NFFGDVVTFD 240 TTYKKNKEYR LLGVFVGFNQ HRQIVIFGAH IMYDETIDFF KWVFGTFLEA MYGKRPSTIL 300 TDQDHAMAAA LSVVMPETFH SLCTFHIRRN FMKHLGNHCK ENSDLLYIFG ACIYEFEEVE 360 QFNRFFRHFN RVVDEKRHNE LIAEYEMRQK LPMVGLRQTP MFVHASETYS PTIFVTFQNK 420 YGESTAMIIL RQQDAAMFME FTVMRYDGGP ERIVVFNRND LSMRCSCKKY ENEGILYGHA 480 LKVFDTVGIK IIPPEYVKKR WTKRARVGDC FDRQGWEVVA DPKIMISTRY REFAPTMIKV 540 ATRAAMSEDT SKVAITVISD LAKRIELLLS ESEEQPLQNE KNLNMEERDK IEIVNEMEEA 600 VVVRGLRIGA DIGFICRIHV YGMSFMCWRL MILLCRMDVP SGSRVRSIAK QGRGVLPMIK 660 YQIRPRGATL RWSPASRFRR CECRHKFAYP NTLVFAVDKE RKELAKDYAK IEAEVKQLRE 720 ANKRQAERIK ELEYDLSEGQ DRVDDLCTQL GEMRKRMTKR ARQLRENAGT MLNLCEDLLG 780 DESVESSSVG GGVGSEPSQA NRSSSPTVG

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MDCSKLTEDG TPELGMEFNS EEDAYKFYKK YAFKMGFSVS KNYLNKDKDS VTTSRRYSCC  60
KEGVKRKYKG DVMPKRTRAP TKTGCGAKMV IILFRGTMKY CVHDLVLERN HELHITQCAH  120
MMPSQRKVSV AQGFQGEISE DAGFSMKQSH ELMGKEAGGM GNVDYTRDDL KRYLRTRRER  180
SLKYGEAGSM INYFQEQTLE NPSFFHAVQL DCEEEITNIF WTDTGMLIDY NFFGDVVTFD  240
TTYKKNKEYR LLGVFVGFNQ HRQIVIFGAH IMYDETIDFF KWVFGTFLEA MYGKRPSTIL  300
TDQDHAMAAA LSVVMPETFH SLCTFHIRRN FMKHLGNHCK ENSDLLYIFG ACIYEFEEVE  360
QFNRFFRHFN RVVDEKRHNE LIAEYEMRQK LPMVGLRQTP MFVHASETYS PTIFVTFQNK  420
YGESTAMIIL RQQDAAMFME FTVMRYDGGP ERIVVFNRND LSMRCSCKKY ENEGILYGHA  480
LKVFDTVGIK IIPPEYVKKR WTKRARVGDC FDRQGWEVVA DPKIMISTRY REFAPTMIKV  540
ATRAAMSEDT SKVAITVISD LAKRIELLLS ESEEQPLQNE KNLNMEERDK IEIVNEMEEA  600
VVVRGLRIGA DIGFICRIHV YGMSFMCWRL MILLCRMDVP SGSRVRSIAK QGRGVLPMIK  660
YQIRPRGATL RWSPASRFRR CECRHKFAYP NTLVFAVDKE RKELAKDYAK IEAEVKQLRE  720
ANKRQAERIK ELEYDLSEGQ DRVDDLCTQL GEMRKRMTKR ARQLRENAGT MLNLCEDLLG  780
DESVESSSVG GGVGSEPSQA NRSSSPTVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-51	FAR1 family protein