PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067929.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 694aa    MW: 75583.4 Da    PI: 6.5619
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57e-29208261155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_027067929.1 208 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 261
                     79*******************.********************************8 PP
2Myb_DNA-binding37.74.6e-12210260148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m+ +g+t++++ s++qky+
   XP_027067929.1 210 RVVWSIELHRKFVAAVNQLGIEkaVPKRILDLMNvEGLTRENVASHLQKYR 260
                      678***********************************************7 PP
3Response_reg81.82.3e-27261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll  +l+k +y +v++++++++al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  G
  XP_027067929.1  26 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARAALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGVTHG 118
                     799********************.***************888889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+ +eel++
  XP_027067929.1 119 ACDYLVKPVRIEELRN 134
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MTVEELRGNS EGGDRNYDNF PVGMRVLAVD DDPICLKLLD GLLRKCQYHV TTTSQARAAL  60
KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDPKL VMKGVTHGAC  120
DYLVKPVRIE ELRNIWQHVI RRKKFDTNKQ GKSTYEDKAL QGHGDVCQGH QNTGTTDQNG  180
KLNKKRKDEE DESEDTGNDH EDPATQKKPR VVWSIELHRK FVAAVNQLGI EKAVPKRILD  240
LMNVEGLTRE NVASHLQKYR LYLKRISSVA TQQANMVAAL GGKDAAYMRM STLDGFGDFR  300
TLSGSGRLSN PAFASYTQGG MLGRLNSPAG INLRNLASPT VVHPSHAQTL NNSTGTLGKL  360
HPAVSPASQT ASVFQGVPSS LELDQLQQNK SAMHIGDFNP MDDSRIFGAP SAFTDARALA  420
INSNSNLTGV PNNSLMLQGN SQQILAGGGF VDQSSFPSEL FNRDVGVSSK FVDHGRTNEN  480
WQSAVQLSKF PSNALAPNDS FSQGQLPLSS VRDNNSSAGP HQQNSPLGFS STATTAAPLE  540
DSRGEIQCQE GLVSGSVQNL SQASAQRWGV SKQSYSHNSN NSFSTLNPQA SPPLSQSMGQ  600
TGITDRRMDM CLTGQSGVGI SSFLQHSQVE NPTTGSRTRS GEDYMLEQIR PQGGFVPNSY  660
DSLDDLMSAI KREPNGSMFD GDMGFDAYQF GSCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-135ARR-B family protein