PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068560.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 417aa MW: 47866.3 Da PI: 5.9246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.7	8e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k+ ++g +++r++ C keg +++ + + + +rtra t+tgC k+++ + + + k++v++l+leHnHel XP_027068560.1 26 KFYNKYAFKMGFSVRKNYLNKN-KDGVTMSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGVKMVIVLFReTMKYHVHDLVLEHNHEL 113 6*****************99.8899************9999.999*************998889*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDCSKLTENQ TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KNYLNKNKDG VTMSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGVKMV IVLFRETMKY HVHDLVLEHN HELHITQCSH 120 MMPSQRKVSE TQGFQTEISE DAGFSLKQSH EFMGKDAGGM GNVGYTREDL KRYLRTRRER 180 SLKYREAEML IDYNFFGDVV TFDTTYKTNK EYRPLGVFVS FNQYRQIVIV GAVLMYDETI 240 DSFKWVFGTF IEAMCGKRLS TILTDQDHAM ATALSVVMPE IFHAMVILRQ KDAAMIVEFV 300 VMRYDEGLER IVVFNRNDLS VSELDLTSVS FEEYMFMGCR SSTDSVSTHS MSQTMNGPPN 360 AVAPNIDESE TEEHVTISTH CDVDAYHVFA PSPQGRNNIQ GLQLRVDVAS PENEVDE

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDCSKLTENQ TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KNYLNKNKDG VTMSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGVKMV IVLFRETMKY HVHDLVLEHN HELHITQCSH  120
MMPSQRKVSE TQGFQTEISE DAGFSLKQSH EFMGKDAGGM GNVGYTREDL KRYLRTRRER  180
SLKYREAEML IDYNFFGDVV TFDTTYKTNK EYRPLGVFVS FNQYRQIVIV GAVLMYDETI  240
DSFKWVFGTF IEAMCGKRLS TILTDQDHAM ATALSVVMPE IFHAMVILRQ KDAAMIVEFV  300
VMRYDEGLER IVVFNRNDLS VSELDLTSVS FEEYMFMGCR SSTDSVSTHS MSQTMNGPPN  360
AVAPNIDESE TEEHVTISTH CDVDAYHVFA PSPQGRNNIQ GLQLRVDVAS PENEVDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-38	FAR1 family protein