PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068828.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LSD

Protein Properties

Length: 181aa MW: 19126.4 Da PI: 8.5504

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.7	6.9e-12	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr +L YPrGA++V+Ca C++ XP_027068828.1 7 CSGCRSVLLYPRGATNVCCAFCNA 30 **********************97 PP
2	zf-LSD1	49.6	6.4e-16	51	75	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV XP_027068828.1 51 CGGCRTLLMYTRGATSVRCSCCHTV 75 ************************9 PP
3	zf-LSD1	47.4	3e-15	88	111	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ XP_027068828.1 88 CGNCRTTLMYPYGAPSVKCAVCHY 111 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MQSQIVCSGC RSVLLYPRGA TNVCCAFCNA LTPVPPPQLP PPGMDMAQLI CGGCRTLLMY 60 TRGATSVRCS CCHTVNLAPV SNVAHVNCGN CRTTLMYPYG APSVKCAVCH YITNVNMSNT 120 RVPIPMHQPS GTVTPPLMPS TSSQGLAHSQ SQTVVVENPM SVDKSGKLVS NVVVGVTTEK 180 K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-72	LSD family protein