PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068888.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 284aa    MW: 32655.8 Da    PI: 8.6864
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-1114654297
                    TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    + r W v++   k  +  ++++GW++F  +n L+ gD +vF+++g +ef   +k++
  XP_027068888.1 14 DKRIWAVEV--AKIENDLFFQAGWSQFLAENCLEFGDLLVFQYNGGQEF--DFKIL 65
                    5699*****..9*******************************987777..66665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
SLPDKVFLKN HYDDKRIWAV EVAKIENDLF FQAGWSQFLA ENCLEFGDLL VFQYNGGQEF  60
DFKILGKTAD KREVIYAFDF SSEEQQEEEY PQEMESENKS RRGAVGLKTK SNSDSGRQEE  120
FEEVSSKKKQ KRDFQGSAAR KRSLQRREIS ENKAGRSIKA CGKGVHFIDN TADAEFKSRD  180
DRPITPCFVA KVDEKRSNLV HVPKDLVTAC GIYPEQTVTI LDPAGNKRTT KVKQWQDGRF  240
VMAGSWKFLF IRNGMRHKDS FLCEFVQGAD PSEALIKVYP HRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.12e-10B3 family protein