PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027069244.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 215aa    MW: 24477 Da    PI: 5.468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027069244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-103781554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + e Er+RR+++ + ++ Lr ++P+ +      K++Ka+i + A+ YI++L
  XP_027069244.1 37 NIESERKRRKKLTETLHALRAVVPNiS------KMDKASIIKDAIGYIQEL 81
                    5689*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MDDIDVLCND YWENMILQTE QLGSSPDGAQ SSAASKNIES ERKRRKKLTE TLHALRAVVP  60
NISKMDKASI IKDAIGYIQE LHNQERMIQA EISELESKRR IFPDFDQEIS YNSKPKRSRF  120
EQTCDSSESR SSPIEVLEFS VSHMGEKTIV VSLTCSKRTD TMVKICEVFE SLNLKIITAN  180
IIAFSDRLLK TLFLEANEEE KDVKIKIQTA IAALK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14148ERKRRKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-68bHLH family protein