PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069326.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 194aa MW: 22166.6 Da PI: 7.1984

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ av lG ++W + a+ g++R++ +c++rw +yl XP_027069326.1 15 KGPWLEEEDERLIAAVSILGERRWGSLAKASGLRRSGRSCRLRWMNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.5	6.6e-18	71	113	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+eE+ l+v+++kq+G++ W++Iar ++ gRt++++k++w+++l XP_027069326.1 71 ITEEEEHLIVQLHKQWGNR-WSRIARSLP-GRTDNEIKNYWRTHL 113 59***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MDHYQVAMQE AEMRKGPWLE EEDERLIAAV SILGERRWGS LAKASGLRRS GRSCRLRWMN 60 YLRPNLKHGH ITEEEEHLIV QLHKQWGNRW SRIARSLPGR TDNEIKNYWR THLRKKALIL 120 EEESSASNSR QSVTTTASTA ATTNNSEQNS PLGICEAFSS LHSNNGDWDS EKDDYNLRTC 180 GDLSGEVEKL SSLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	4e-44	MYB family protein