PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069363.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 488aa MW: 55221.6 Da PI: 6.2678

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.4	4.4e-24	119	219	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_027069363.1 119 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 213 7************999999964336777789999999******************************************55**** PP trihelix 81 yfdqle 86 ++d ++ XP_027069363.1 214 LLDTMD 219 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MYSNMGSGML GLEISLHHQL PQGQTTQNPH HMQPQPPQQQ LQPPPPPSHH PMVVFGHHEA 60 DQPHHPQHAQ LSSKQAYPFS AKAKNQALAP SDDDEPGLGT ENSADIDGMR KIPPWQRMKW 120 TDNMVRLLIM VVFYIGDEVG SEGNDPAGKK KGAGGVLQKK GKWKSVSRAM MERGFFVSPQ 180 QCEDKFNDLN KRYKRVNDIL GKGTACRVVE NQSLLDTMDH LSAKMKEEVK KLLSSKHLFF 240 REMCAYHNSC GHGGTGGASS SGAAQQSTEV GGVEPSSQMQ QQQRCLHTSE NASTPPNLAR 300 CEVEGSKTTK GRSFEEDNDE DDDDDDDDEE YEDDVVEGGG SGCEHGHPEE DDDTPDERCA 360 RKRRRKGIFL SPLVQQMSTE LVKVLQDESK NSAEKRQWIK NRLLQLEERH VGFQSEAFEL 420 EKQRLKWVKF SSKKEREMER DKLSNDRLRL ENERMMLLIR QKELELLDVY QQQQHQSSRK 480 SDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MYSNMGSGML GLEISLHHQL PQGQTTQNPH HMQPQPPQQQ LQPPPPPSHH PMVVFGHHEA  60
DQPHHPQHAQ LSSKQAYPFS AKAKNQALAP SDDDEPGLGT ENSADIDGMR KIPPWQRMKW  120
TDNMVRLLIM VVFYIGDEVG SEGNDPAGKK KGAGGVLQKK GKWKSVSRAM MERGFFVSPQ  180
QCEDKFNDLN KRYKRVNDIL GKGTACRVVE NQSLLDTMDH LSAKMKEEVK KLLSSKHLFF  240
REMCAYHNSC GHGGTGGASS SGAAQQSTEV GGVEPSSQMQ QQQRCLHTSE NASTPPNLAR  300
CEVEGSKTTK GRSFEEDNDE DDDDDDDDEE YEDDVVEGGG SGCEHGHPEE DDDTPDERCA  360
RKRRRKGIFL SPLVQQMSTE LVKVLQDESK NSAEKRQWIK NRLLQLEERH VGFQSEAFEL  420
EKQRLKWVKF SSKKEREMER DKLSNDRLRL ENERMMLLIR QKELELLDVY QQQQHQSSRK  480
SDPSSITG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	365	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	6e-74	Trihelix family protein