PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069364.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 480aa MW: 54393.6 Da PI: 6.2678

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.2e-24	111	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_027069364.1 111 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 205 7************999999964336777789999999******************************************55**** PP trihelix 81 yfdqle 86 ++d ++ XP_027069364.1 206 LLDTMD 211 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MLGLEISLHH QLPQGQTTQN PHHMQPQPPQ QQLQPPPPPS HHPMVVFGHH EADQPHHPQH 60 AQLSSKQAYP FSAKAKNQAL APSDDDEPGL GTENSADIDG MRKIPPWQRM KWTDNMVRLL 120 IMVVFYIGDE VGSEGNDPAG KKKGAGGVLQ KKGKWKSVSR AMMERGFFVS PQQCEDKFND 180 LNKRYKRVND ILGKGTACRV VENQSLLDTM DHLSAKMKEE VKKLLSSKHL FFREMCAYHN 240 SCGHGGTGGA SSSGAAQQST EVGGVEPSSQ MQQQQRCLHT SENASTPPNL ARCEVEGSKT 300 TKGRSFEEDN DEDDDDDDDD EEYEDDVVEG GGSGCEHGHP EEDDDTPDER CARKRRRKGI 360 FLSPLVQQMS TELVKVLQDE SKNSAEKRQW IKNRLLQLEE RHVGFQSEAF ELEKQRLKWV 420 KFSSKKEREM ERDKLSNDRL RLENERMMLL IRQKELELLD VYQQQQHQSS RKSDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MLGLEISLHH QLPQGQTTQN PHHMQPQPPQ QQLQPPPPPS HHPMVVFGHH EADQPHHPQH  60
AQLSSKQAYP FSAKAKNQAL APSDDDEPGL GTENSADIDG MRKIPPWQRM KWTDNMVRLL  120
IMVVFYIGDE VGSEGNDPAG KKKGAGGVLQ KKGKWKSVSR AMMERGFFVS PQQCEDKFND  180
LNKRYKRVND ILGKGTACRV VENQSLLDTM DHLSAKMKEE VKKLLSSKHL FFREMCAYHN  240
SCGHGGTGGA SSSGAAQQST EVGGVEPSSQ MQQQQRCLHT SENASTPPNL ARCEVEGSKT  300
TKGRSFEEDN DEDDDDDDDD EEYEDDVVEG GGSGCEHGHP EEDDDTPDER CARKRRRKGI  360
FLSPLVQQMS TELVKVLQDE SKNSAEKRQW IKNRLLQLEE RHVGFQSEAF ELEKQRLKWV  420
KFSSKKEREM ERDKLSNDRL RLENERMMLL IRQKELELLD VYQQQQHQSS RKSDPSSITG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	353	357	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	5e-74	Trihelix family protein