PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069551.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 408aa MW: 45736.6 Da PI: 7.2345

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_027069551.1 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 99 79****************************************************8 PP
2	Myb_DNA-binding	62.6	7.7e-20	47	98	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+k++ + mg +g+tl+++ks++qky+ XP_027069551.1 47 RLKWTPDLHERFIEAVNQLGGAdkaTPKSVLKLMGiQGLTLYHLKSHLQKYR 98 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAGDRIP 120 ETNAASIINP SIGSQANKNL HIGEAIQMQI EVQRRLHEQL ELRIEAQGKY LQAVLEKAQE 180 TLGRQNLGSV GLEAAKVQLS ELVSKMSDQC LNSAFSDMKE LPGSCPQQTQ TPQPTDCSMD 240 SCLTSCEGSL RDQEMHNNQM MLRPLNLRTD MEFNNMNNEA SLQHAERRWC DDLMKEKRKL 300 VSTMNEEAEK ACAAEKNIGN LSMSIGLQGG RWNSHHSYLE KRGREAESEI KFFDQPHNRY 360 GPIPPETQRP SEEYKLPFFA PKLDLNTDDG ADAGSRCKQF DLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAGDRIP  120
ETNAASIINP SIGSQANKNL HIGEAIQMQI EVQRRLHEQL ELRIEAQGKY LQAVLEKAQE  180
TLGRQNLGSV GLEAAKVQLS ELVSKMSDQC LNSAFSDMKE LPGSCPQQTQ TPQPTDCSMD  240
SCLTSCEGSL RDQEMHNNQM MLRPLNLRTD MEFNNMNNEA SLQHAERRWC DDLMKEKRKL  300
VSTMNEEAEK ACAAEKNIGN LSMSIGLQGG RWNSHHSYLE KRGREAESEI KFFDQPHNRY  360
GPIPPETQRP SEEYKLPFFA PKLDLNTDDG ADAGSRCKQF DLNGFSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-126	G2-like family protein