PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069583.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 807aa MW: 93514.8 Da PI: 8.3926

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.6	2e-18	80	169	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY +Y+k +GF +r+ ++kk+ +g + r + C++egkr+ ++ + ++++r+++a tr++Cka+lk++ e +k++v+ + +eH+H la XP_027069583.1 80 FYLNYGKATGFGIRRGYKKKH-PDGYVRYRAWLCNREGKRDGKHIErQDRQREPKAMTRVNCKACLKIRYELkIKKYVVSGFISEHTHRLA 169 9*************98887.8999**********98887657888999***********99889*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MESWEDEIGR RHVVDLNEEV DEESDDCEYV NPSRIQAEED VEEEPNKEGN DEEVYEVVQN 60 MSQYDVMTMQ FETVKDAECF YLNYGKATGF GIRRGYKKKH PDGYVRYRAW LCNREGKRDG 120 KHIERQDRQR EPKAMTRVNC KACLKIRYEL KIKKYVVSGF ISEHTHRLAS PESVAFMRSH 180 RRVSDGAYAQ AHTLRRIGVG ASQIVKLFAL QAGGYGNIGF TPKDLYNKLH RKRMEEIAGG 240 DAEAAIAYMA GKNDGDLNFY FKYLLNDEGR LIRLFWADSR SRDDYRCFGD VLVFDSTYNT 300 NGYDFPLVVF CGVNNHYSTC IFGCALLVRE GDDAYEWAIT TFLEGMNDKK PCSVVTDGDK 360 SMRKAIQKLL PSARHRLCSW HLECNANTNV KNKAFLDAFK GCMFMNCTPD QFELKWAEIV 420 KKFDLTSNAW VQKMHRRKEL WAMAYLRGSF FAGMRSTQRC EKMNHVLKMY LTPKLKLYEH 480 IRSFEICIAW LRHEESRNRN QTEHTDLLPA TKMNSLERHA AELYTRKTFL MVREEMKMQG 540 MYCRYNGIDD GVQCIHFLQH SYLKVEYRVQ YNRFSGEMRC SCLKMETQGL PCCHMFRIML 600 FEHLDKIPEN CILKRWTRKA KECLMLQDDT SNGSIRLTEM ARYAKLISGC NNLCFHAAKT 660 LEGFRRIEDM ITTEIVHVKE VQLRAEKLPI QSITPAMSKK FGVLDPPSDR QAKGAVAKGK 720 RRHEEHRMCG NCRARDGHNR RSCKMPRQPA VLSPVEASLE AGLNSDDDNR GSQFSSEQAL 780 NLSSHGCEQQ AHRLPRMTAG WPSLNNV

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MESWEDEIGR RHVVDLNEEV DEESDDCEYV NPSRIQAEED VEEEPNKEGN DEEVYEVVQN  60
MSQYDVMTMQ FETVKDAECF YLNYGKATGF GIRRGYKKKH PDGYVRYRAW LCNREGKRDG  120
KHIERQDRQR EPKAMTRVNC KACLKIRYEL KIKKYVVSGF ISEHTHRLAS PESVAFMRSH  180
RRVSDGAYAQ AHTLRRIGVG ASQIVKLFAL QAGGYGNIGF TPKDLYNKLH RKRMEEIAGG  240
DAEAAIAYMA GKNDGDLNFY FKYLLNDEGR LIRLFWADSR SRDDYRCFGD VLVFDSTYNT  300
NGYDFPLVVF CGVNNHYSTC IFGCALLVRE GDDAYEWAIT TFLEGMNDKK PCSVVTDGDK  360
SMRKAIQKLL PSARHRLCSW HLECNANTNV KNKAFLDAFK GCMFMNCTPD QFELKWAEIV  420
KKFDLTSNAW VQKMHRRKEL WAMAYLRGSF FAGMRSTQRC EKMNHVLKMY LTPKLKLYEH  480
IRSFEICIAW LRHEESRNRN QTEHTDLLPA TKMNSLERHA AELYTRKTFL MVREEMKMQG  540
MYCRYNGIDD GVQCIHFLQH SYLKVEYRVQ YNRFSGEMRC SCLKMETQGL PCCHMFRIML  600
FEHLDKIPEN CILKRWTRKA KECLMLQDDT SNGSIRLTEM ARYAKLISGC NNLCFHAAKT  660
LEGFRRIEDM ITTEIVHVKE VQLRAEKLPI QSITPAMSKK FGVLDPPSDR QAKGAVAKGK  720
RRHEEHRMCG NCRARDGHNR RSCKMPRQPA VLSPVEASLE AGLNSDDDNR GSQFSSEQAL  780
NLSSHGCEQQ AHRLPRMTAG WPSLNNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	364	KKPCSVVTDGDKSMRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-90	FAR1 family protein