PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027069953.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 198aa    MW: 21282.9 Da    PI: 7.631
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027069953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-089431347
                     HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     + + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_027069953.1  9 LVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 43
                     66789*****************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MDRRGTPFLV GLEKLGKGDW RGISRNFVTT RTPTQVASHA QKYFLRQASL NKKKRRSSLF  60
DMVGSKNAAR HQVFDLSFEL TNDTTSATCL SSKASSDLDT AAPLLDLNSF AVDTTTNHQD  120
CIEVQEGSSS HHMDIDSMSI WPAASGSSSY QLSNISSITS TTGAPDLELT LAAPKTAAQN  180
NPPPPPASIL IMGPISVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-30MYB_related family protein