PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070014.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 554aa MW: 59367.7 Da PI: 9.6405

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027070014.1 75 FICEICNKGFQREQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.6	0.00042	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_027070014.1 152 WKCEKCSKKYAVQSDWKAHSKTC 174 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MLVMSANMFT VPPSVNGFSP EPADTNPTSS NSNPKSNSTT TNPAGKKKRN LPGNPDPDAE 60 VIALSPKTLM ATNRFICEIC NKGFQREQNL QLHRRGHNLP WKLKQRTTKE QVKRKVYICP 120 EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK 180 CDCGTLFSRK DSFITHRAFC DALAEESARI TSVAANNFNF KTDQQHLNGG ALLNHPGSFP 240 HGLSGPSGIS QIGVDFATGN QLKPRLSLWL DQASNPQLNH ADMPPSQNLY MPSASHHDIM 300 QMSSAADVFG NYGMPWQQLE KSSAPPSSAS SSSAANLSLS PMMPQQVLKD EGAGGSINTQ 360 TLSSLYSPSA ASNNDISHSK SSATPMSATA LLQKAAQMGS SKSTAAIFGN GFGIMNPSSS 420 SSSPAVAANM IAPAAFSSGL AQNRTEMMQV FGKQTDNMMG GGSNMTSSTS STLTNNLDHQ 480 PMVQTSTVAD SQTVASLGGF HRHPGFNAVV EHASLTRDFL GMGGDGGRPF LPHELAKFAS 540 MSSAMGLGHF SSNH

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MLVMSANMFT VPPSVNGFSP EPADTNPTSS NSNPKSNSTT TNPAGKKKRN LPGNPDPDAE  60
VIALSPKTLM ATNRFICEIC NKGFQREQNL QLHRRGHNLP WKLKQRTTKE QVKRKVYICP  120
EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK  180
CDCGTLFSRK DSFITHRAFC DALAEESARI TSVAANNFNF KTDQQHLNGG ALLNHPGSFP  240
HGLSGPSGIS QIGVDFATGN QLKPRLSLWL DQASNPQLNH ADMPPSQNLY MPSASHHDIM  300
QMSSAADVFG NYGMPWQQLE KSSAPPSSAS SSSAANLSLS PMMPQQVLKD EGAGGSINTQ  360
TLSSLYSPSA ASNNDISHSK SSATPMSATA LLQKAAQMGS SKSTAAIFGN GFGIMNPSSS  420
SSSPAVAANM IAPAAFSSGL AQNRTEMMQV FGKQTDNMMG GGSNMTSSTS STLTNNLDHQ  480
PMVQTSTVAD SQTVASLGGF HRHPGFNAVV EHASLTRDFL GMGGDGGRPF LPHELAKFAS  540
MSSAMGLGHF SSNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-103	C2H2 family protein