PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070302.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 200aa    MW: 22714.1 Da    PI: 11.172
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.15.9e-332379158
       CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                    d p+YVNaKQy++Il+RRq Rakle+++k+  k+rkpylheSRh+hA++R RgsgGrF
  XP_027070302.1 23 DGPIYVNAKQYHGILRRRQVRAKLEAQNKM-VKGRKPYLHESRHQHAMNRVRGSGGRF 79
                    57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MIQPQMMGIA PARVPLPPDL AQDGPIYVNA KQYHGILRRR QVRAKLEAQN KMVKGRKPYL  60
HESRHQHAMN RVRGSGGRFL STKKQQQQSE STLSTGSFSA SIHSCQETDA LEMEAERSND  120
SRHYASTSTS SSAMDTLLMI SFSSSMPTAT SAFLVKSLVR CRREASCRME LRSMFRLPGE  180
KRSKKHRTWQ FILGFVTFKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RLPGEKRSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-33NF-YA family protein