PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070307.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YA

Protein Properties

Length: 184aa MW: 20875.9 Da PI: 10.8498

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	30.7	1e-09	23	41	1	19
CBFB_NFYA 1 deplYVNaKQyqrIlkRRq 19 d p+YVNaKQy++Il+RRq XP_027070307.1 23 DGPIYVNAKQYHGILRRRQ 41 57****************8 PP
2	CBFB_NFYA	41	6.1e-13	40	63	35	58
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 r+pylheSRh+hA++R RgsgGrF XP_027070307.1 40 RQPYLHESRHQHAMNRVRGSGGRF 63 99*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MIQPQMMGIA PARVPLPPDL AQDGPIYVNA KQYHGILRRR QPYLHESRHQ HAMNRVRGSG 60 GRFLSTKKQQ QQSESTLSTG SFSASIHSCQ ETDALEMEAE RSNDSRHYAS TSTSSSAMDT 120 LLMISFSSSM PTATSAFLVK SLVRCRREAS CRMELRSMFR LPGEKRSKKH RTWQFILGFV 180 TFKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	168	RLPGEKRSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-21	NF-YA family protein