PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070405.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 397aa MW: 43900.8 Da PI: 8.4383

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.5	4.5e-23	33	98	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++ +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_027070405.1 33 RKQKSLGLLCSNFLRLYDREGVETIGLDDAAARL---GV--ERRRIYDIVNVLESVGVLARKAKNRYTWKG 98 79***************999********.....****************************98 PP
2	E2F_TDP	72.7	4.2e-23	169	249	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ + + ++++l+++ak L+++ ++ k+RR+YDi+NVL +++ iek ++k+++rw g XP_027070405.1 169 RKEKSLALLTQNFVKLFLCMDMDMISLDDAAKILLKNgkdpaMTRSKVRRLYDIANVLASMKFIEKthhpeTRKPAFRWLG 249 79*******************************9998899*****************99999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MGMELLPSTN QASEAAAAAA GGSGGGSQHI YCRKQKSLGL LCSNFLRLYD REGVETIGLD 60 DAAARLGVER RRIYDIVNVL ESVGVLARKA KNRYTWKGFG AIPSALQLLM EEGMMTNENA 120 NDGTSSVKTS DDEEDDTYSS LSNYSSQNHN FNPISAPKLP QSSKYADNRK EKSLALLTQN 180 FVKLFLCMDM DMISLDDAAK ILLKNGKDPA MTRSKVRRLY DIANVLASMK FIEKTHHPET 240 RKPAFRWLGM KGISESGADP SAIDGSKKRA FGMDLTNMTV KRSKVEPVGD GGLQQGMKVQ 300 LKAQVKREAL EDEVLRPKLQ IDSRASTKSY RFGPFAPVNA PQVAASEDNK ETQSHDWESL 360 TATYRPQYHN QGIMLDHTIS FERSFCTLCG SLEILVH

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MGMELLPSTN QASEAAAAAA GGSGGGSQHI YCRKQKSLGL LCSNFLRLYD REGVETIGLD  60
DAAARLGVER RRIYDIVNVL ESVGVLARKA KNRYTWKGFG AIPSALQLLM EEGMMTNENA  120
NDGTSSVKTS DDEEDDTYSS LSNYSSQNHN FNPISAPKLP QSSKYADNRK EKSLALLTQN  180
FVKLFLCMDM DMISLDDAAK ILLKNGKDPA MTRSKVRRLY DIANVLASMK FIEKTHHPET  240
RKPAFRWLGM KGISESGADP SAIDGSKKRA FGMDLTNMTV KRSKVEPVGD GGLQQGMKVQ  300
LKAQVKREAL EDEVLRPKLQ IDSRASTKSY RFGPFAPVNA PQVAASEDNK ETQSHDWESL  360
TATYRPQYHN QGIMLDHTIS FERSFCTLCG SLEILVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	1e-101	E2F/DP family protein